Package: NormExpression 0.1.1
NormExpression: Normalize Gene Expression Data using Evaluated Methods
It provides a framework and a fast and simple way for researchers to evaluate methods (particularly some data-driven methods or their own methods) and then select a best one for data normalization in the gene expression analysis, based on the consistency of metrics and the consistency of datasets. Zhenfeng Wu, Weixiang Liu, Xiufeng Jin, Deshui Yu, Hua Wang, Gustavo Glusman, Max Robinson, Lin Liu, Jishou Ruan and Shan Gao (2018) <doi:10.1101/251140>.
Authors:
NormExpression_0.1.1.tar.gz
NormExpression_0.1.1.zip(r-4.5)NormExpression_0.1.1.zip(r-4.4)NormExpression_0.1.1.zip(r-4.3)
NormExpression_0.1.1.tgz(r-4.4-any)NormExpression_0.1.1.tgz(r-4.3-any)
NormExpression_0.1.1.tar.gz(r-4.5-noble)NormExpression_0.1.1.tar.gz(r-4.4-noble)
NormExpression_0.1.1.tgz(r-4.4-emscripten)NormExpression_0.1.1.tgz(r-4.3-emscripten)
NormExpression.pdf |NormExpression.html✨
NormExpression/json (API)
| # Install 'NormExpression' in R: |
| install.packages('NormExpression', repos = c('https://gaoshant.r-universe.dev', 'https://cloud.r-project.org')) |
- bkRNA18 - BkRNA18
- bkRNA18_factors - BkRNA18_factors
- scRNA663 - ScRNA663
- scRNA663_factors - ScRNA663_factors
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 8 months agofrom:e77fe377ae. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 17 2024 |
| R-4.5-win | OK | Oct 17 2024 |
| R-4.5-linux | OK | Oct 17 2024 |
| R-4.4-win | OK | Oct 17 2024 |
| R-4.4-mac | OK | Oct 17 2024 |
| R-4.3-win | OK | Oct 17 2024 |
| R-4.3-mac | OK | Oct 17 2024 |
Exports:calcFactorRLEcalcFactorUpperquartilecalcFactorWeightedchange_coloursCV2AUCVCestimateSizeFactorsForMatrixfilteredZerofindGenesgatherCorsgatherCors4MatricesgatherCVsgatherCVs4MatricesgatherFactorsgetAreagetAUCVCgetAUCVCsgetCorgetCorMediansgetCVgetFactorsgetNormMatrixgridAUCVCgridAUCVC4MatricesidentifyUbqidentifyUbqRepeatnonzeroRatio2AUCVCoptTUplotCorsplotCVsplotHC
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| bkRNA18 | bkRNA18 |
| bkRNA18_factors | bkRNA18_factors |
| calcFactorRLE | calcFactorRLE |
| calcFactorUpperquartile | calcFactorUpperquartile |
| calcFactorWeighted | calcFactorWeighted |
| change_colours | change_colours |
| CV2AUCVC | CV2AUCVC |
| estimateSizeFactorsForMatrix | estimateSizeFactorsForMatrix |
| filteredZero | filteredZero |
| findGenes | findGenes |
| gatherCors | gatherCors |
| gatherCors4Matrices | gatherCors4Matrices |
| gatherCVs | gatherCVs |
| gatherCVs4Matrices | gatherCVs4Matrices |
| gatherFactors | gatherFactors |
| getArea | getArea |
| getAUCVC | getAUCVC |
| getAUCVCs | getAUCVCs |
| getCor | getCor |
| getCorMedians | getCorMedians |
| getCV | getCV |
| getFactors | getFactors |
| getNormMatrix | getNormMatrix |
| gridAUCVC | gridAUCVC |
| gridAUCVC4Matrices | gridAUCVC4Matrices |
| identifyUbq | identifyUbq |
| identifyUbqRepeat | identifyUbqRepeat |
| nonzeroRatio2AUCVC | nonzeroRatio2AUCVC |
| optTU | optTU |
| plotCors | plotCors |
| plotCVs | plotCVs |
| plotHC | plotHC |
| scRNA663 | scRNA663 |
| scRNA663_factors | scRNA663_factors |
